Index

B

BTree::AbstractNode (C++ class) BTree::AbstractNode::AbstractNode (C++ function), [1] BTree::AbstractNode::calculateElectricField (C++ function) BTree::AbstractNode::computeChargeDistributionRecursive (C++ function) BTree::AbstractNode::getCenter (C++ function) BTree::AbstractNode::getCenterOfCharge (C++ function) BTree::AbstractNode::getCharge (C++ function) BTree::AbstractNode::getMax (C++ function) BTree::AbstractNode::getMin (C++ function) BTree::AbstractNode::getNumberOfNodes (C++ function) BTree::AbstractNode::getNumberOfParticles (C++ function) BTree::AbstractNode::getOctant (C++ function) BTree::AbstractNode::getParticle (C++ function) BTree::AbstractNode::initAsRoot (C++ function) BTree::AbstractNode::insertParticle (C++ function) BTree::AbstractNode::isRoot (C++ function) BTree::AbstractNode::Octant (C++ enum) BTree::AbstractNode::Octant::NEB (C++ enumerator) BTree::AbstractNode::Octant::NET (C++ enumerator) BTree::AbstractNode::Octant::NWB (C++ enumerator) BTree::AbstractNode::Octant::NWT (C++ enumerator) BTree::AbstractNode::Octant::SEB (C++ enumerator) BTree::AbstractNode::Octant::SET (C++ enumerator) BTree::AbstractNode::Octant::SWB (C++ enumerator) BTree::AbstractNode::Octant::SWT (C++ enumerator) BTree::AbstractNode::removeMyselfFromTree (C++ function) BTree::AbstractNode::toString (C++ function) BTree::AbstractNode::updateParents (C++ function) BTree::AbstractNode::updateSelf (C++ function) BTree::AbstractNode::~AbstractNode (C++ function) BTree::GenericBaseNode (C++ class) BTree::GenericBaseNode::computeChargeDistributionRecursive (C++ function) BTree::GenericBaseNode::createOctNode (C++ function) BTree::GenericBaseNode::GenericBaseNode (C++ function), [1] BTree::GenericBaseNode::getOctants (C++ function) BTree::GenericBaseNode::initAsRoot (C++ function) BTree::GenericBaseNode::insertParticle (C++ function) BTree::GenericBaseNode::isRoot (C++ function) BTree::GenericBaseNode::operator= (C++ function) BTree::GenericBaseNode::printTree (C++ function) BTree::GenericBaseNode::removeMyselfFromTree (C++ function) BTree::GenericBaseNode::testNodeIntegrity (C++ function) BTree::GenericBaseNode::toString (C++ function)

BTree::GenericBaseNode::updateParents (C++ function) BTree::GenericBaseNode::updateSelf (C++ function) BTree::GenericBaseNode::writeToStream (C++ function) BTree::GenericBaseNode::~GenericBaseNode (C++ function) BTree::Node (C++ class) BTree::Node::computeElectricFieldFromTree (C++ function) BTree::Node::isNodeInSubtree (C++ function) BTree::Node::isParticleInSubtree (C++ function) BTree::Node::Node (C++ function), [1] BTree::Node::operator= (C++ function) BTree::Node::testNodeParticleIntegrity (C++ function) BTree::Node::testSpatialTreeIntegrity (C++ function) BTree::ParallelNode (C++ class) BTree::ParallelNode::countNodesOnLevel (C++ function) BTree::ParallelNode::maximumRecursionDepth (C++ function) BTree::ParallelNode::operator= (C++ function) BTree::ParallelNode::ParallelNode (C++ function), [1] BTree::ParallelNode::serializeIntoVector (C++ function) BTree::ParallelTree (C++ class) BTree::ParallelTree::countNodesOnLevels (C++ function) BTree::ParallelTree::getEFieldFromSpaceCharge (C++ function) BTree::ParallelTree::getNumberOfParticles (C++ function) BTree::ParallelTree::getParticle (C++ function) BTree::ParallelTree::getParticleList (C++ function) BTree::ParallelTree::getRoot (C++ function) BTree::ParallelTree::init (C++ function) BTree::ParallelTree::insertParticle (C++ function) BTree::ParallelTree::ParallelTree (C++ function) BTree::ParallelTree::printParticles (C++ function) BTree::ParallelTree::removeParticle (C++ function) BTree::ParallelTree::updateNodes (C++ function) BTree::ParallelTree::updateParticleLocation (C++ function) BTree::Tree (C++ class) BTree::Tree::computeChargeDistribution (C++ function) BTree::Tree::getEFieldFromSpaceCharge (C++ function) BTree::Tree::getNumberOfParticles (C++ function) BTree::Tree::getParticle (C++ function) BTree::Tree::getParticleList (C++ function) BTree::Tree::getRoot (C++ function) BTree::Tree::insertParticle (C++ function) BTree::Tree::printParticles (C++ function) BTree::Tree::removeParticle (C++ function) BTree::Tree::Tree (C++ function) BTree::Tree::updateParticleLocation (C++ function)

C

CollisionModel (C++ type) CollisionModel::AbstractCollisionModel (C++ class) CollisionModel::AbstractCollisionModel::initializeModelParticleParameters (C++ function) CollisionModel::AbstractCollisionModel::modifyAcceleration (C++ function) CollisionModel::AbstractCollisionModel::modifyPosition (C++ function) CollisionModel::AbstractCollisionModel::modifyVelocity (C++ function) CollisionModel::AbstractCollisionModel::updateModelParticleParameters (C++ function) CollisionModel::AbstractCollisionModel::updateModelTimestepParameters (C++ function) CollisionModel::AbstractCollisionModel::~AbstractCollisionModel (C++ function) CollisionModel::Atom (C++ class) CollisionModel::Atom::Atom (C++ function), [1], [2], [3] CollisionModel::Atom::AtomType (C++ enum) CollisionModel::Atom::AtomType::Ar (C++ enumerator) CollisionModel::Atom::AtomType::C (C++ enumerator) CollisionModel::Atom::AtomType::Cl (C++ enumerator) CollisionModel::Atom::AtomType::COM (C++ enumerator) CollisionModel::Atom::AtomType::H (C++ enumerator) CollisionModel::Atom::AtomType::He (C++ enumerator) CollisionModel::Atom::AtomType::Li (C++ enumerator) CollisionModel::Atom::AtomType::N (C++ enumerator) CollisionModel::Atom::AtomType::O (C++ enumerator) CollisionModel::Atom::AtomType::Sn (C++ enumerator) CollisionModel::Atom::calcLJEps (C++ function) CollisionModel::Atom::calcLJSig (C++ function) CollisionModel::Atom::from_string (C++ function) CollisionModel::Atom::getCharge (C++ function) CollisionModel::Atom::getEpsilon (C++ function) CollisionModel::Atom::getMass (C++ function) CollisionModel::Atom::getPartCharge (C++ function) CollisionModel::Atom::getRelativePosition (C++ function) CollisionModel::Atom::getSigma (C++ function) CollisionModel::Atom::getType (C++ function) CollisionModel::Atom::rotate (C++ function) CollisionModel::Atom::rotate2D (C++ function) CollisionModel::Atom::setCharge (C++ function) CollisionModel::Atom::setEpsilon (C++ function) CollisionModel::Atom::setMass (C++ function) CollisionModel::Atom::setPartCharge (C++ function) CollisionModel::Atom::setRelativePosition (C++ function) CollisionModel::Atom::setSigma (C++ function) CollisionModel::Atom::setType (C++ function) CollisionModel::Atom::~Atom (C++ function) CollisionModel::CollisionStatistics (C++ class) CollisionModel::CollisionStatistics::CollisionStatistics (C++ function), [1] CollisionModel::CollisionStatistics::findUpperDistIndex (C++ function) CollisionModel::CollisionStatistics::getICDFs (C++ function) CollisionModel::CollisionStatistics::getLogMassRatio (C++ function) CollisionModel::CollisionStatistics::getLogMassRatioDistance (C++ function) CollisionModel::CollisionStatistics::getMassRatios (C++ function) CollisionModel::CollisionStatistics::getNCollisions (C++ function) CollisionModel::CollisionStatistics::getNDist (C++ function) CollisionModel::CollisionStatistics::getNDistPoints (C++ function) CollisionModel::HardSphereModel (C++ class) CollisionModel::HardSphereModel::DIAMETER_HE (C++ member) CollisionModel::HardSphereModel::DIAMETER_N2 (C++ member) CollisionModel::HardSphereModel::HardSphereModel (C++ function), [1], [2], [3] CollisionModel::HardSphereModel::initializeModelParticleParameters (C++ function) CollisionModel::HardSphereModel::modifyAcceleration (C++ function) CollisionModel::HardSphereModel::modifyPosition (C++ function) CollisionModel::HardSphereModel::modifyVelocity (C++ function) CollisionModel::HardSphereModel::updateModelParticleParameters (C++ function) CollisionModel::HardSphereModel::updateModelTimestepParameters (C++ function) CollisionModel::MDInteractionsModel (C++ class) CollisionModel::MDInteractionsModel::calcSign (C++ function) CollisionModel::MDInteractionsModel::DIAMETER_HE (C++ member) CollisionModel::MDInteractionsModel::DIAMETER_N2 (C++ member) CollisionModel::MDInteractionsModel::initializeModelParticleParameters (C++ function) CollisionModel::MDInteractionsModel::leapfrogIntern (C++ function) CollisionModel::MDInteractionsModel::MDInteractionsModel (C++ function), [1], [2], [3] CollisionModel::MDInteractionsModel::modifyAcceleration (C++ function) CollisionModel::MDInteractionsModel::modifyPosition (C++ function) CollisionModel::MDInteractionsModel::modifyVelocity (C++ function) CollisionModel::MDInteractionsModel::rk4Intern (C++ function) CollisionModel::MDInteractionsModel::rk4InternAdaptiveStep (C++ function) CollisionModel::MDInteractionsModel::setTrajectoryWriter (C++ function) CollisionModel::MDInteractionsModel::updateModelParticleParameters (C++ function) CollisionModel::MDInteractionsModel::updateModelTimestepParameters (C++ function) CollisionModel::MDInteractionsModel::writeTrajectory (C++ function) CollisionModel::MolecularStructure (C++ class) CollisionModel::MolecularStructure::addAtom (C++ function) CollisionModel::MolecularStructure::getAngularVelocity (C++ function) CollisionModel::MolecularStructure::getAtomCount (C++ function) CollisionModel::MolecularStructure::getAtoms (C++ function) CollisionModel::MolecularStructure::getDiameter (C++ function) CollisionModel::MolecularStructure::getDipole (C++ function) CollisionModel::MolecularStructure::getDipoleMag (C++ function) CollisionModel::MolecularStructure::getIsDipole (C++ function) CollisionModel::MolecularStructure::getIsIon (C++ function) CollisionModel::MolecularStructure::getMass (C++ function) CollisionModel::MolecularStructure::getMomentOfInertia (C++ function) CollisionModel::MolecularStructure::getName (C++ function) CollisionModel::MolecularStructure::MolecularStructure (C++ function), [1] CollisionModel::MolecularStructure::removeAtom (C++ function) CollisionModel::MolecularStructure::setDiameter (C++ function) CollisionModel::MolecularStructure::setName (C++ function) CollisionModel::MolecularStructure::~MolecularStructure (C++ function) CollisionModel::Molecule (C++ class) CollisionModel::Molecule::addAtom (C++ function) CollisionModel::Molecule::getAngles (C++ function) CollisionModel::Molecule::getAtomCount (C++ function) CollisionModel::Molecule::getAtoms (C++ function) CollisionModel::Molecule::getComPos (C++ function) CollisionModel::Molecule::getComVel (C++ function) CollisionModel::Molecule::getDiameter (C++ function) CollisionModel::Molecule::getDipole (C++ function) CollisionModel::Molecule::getDipoleMag (C++ function) CollisionModel::Molecule::getIsDipole (C++ function) CollisionModel::Molecule::getIsIon (C++ function) CollisionModel::Molecule::getMass (C++ function) CollisionModel::Molecule::getMolecularStructureName (C++ function) CollisionModel::Molecule::Molecule (C++ function), [1], [2], [3] CollisionModel::Molecule::removeAtom (C++ function) CollisionModel::Molecule::rotateMolecule (C++ function) CollisionModel::Molecule::setAngles (C++ function) CollisionModel::Molecule::setComPos (C++ function) CollisionModel::Molecule::setComVel (C++ function) CollisionModel::Molecule::setDiameter (C++ function) CollisionModel::Molecule::setMolecularStructureName (C++ function) CollisionModel::Molecule::~Molecule (C++ function) CollisionModel::MultiCollisionModel (C++ class) CollisionModel::MultiCollisionModel::initializeModelParticleParameters (C++ function) CollisionModel::MultiCollisionModel::modifyAcceleration (C++ function) CollisionModel::MultiCollisionModel::modifyPosition (C++ function) CollisionModel::MultiCollisionModel::modifyVelocity (C++ function) CollisionModel::MultiCollisionModel::MultiCollisionModel (C++ function) CollisionModel::MultiCollisionModel::updateModelParticleParameters (C++ function) CollisionModel::MultiCollisionModel::updateModelTimestepParameters (C++ function) CollisionModel::sphereRand (C++ function) CollisionModel::StatisticalDiffusionModel (C++ class) CollisionModel::StatisticalDiffusionModel::index_ionSTPdamping (C++ member) CollisionModel::StatisticalDiffusionModel::index_ptRatio (C++ member) CollisionModel::StatisticalDiffusionModel::index_tRatio (C++ member) CollisionModel::StatisticalDiffusionModel::initializeModelParticleParameters (C++ function) CollisionModel::StatisticalDiffusionModel::modifyAcceleration (C++ function) CollisionModel::StatisticalDiffusionModel::modifyPosition (C++ function) CollisionModel::StatisticalDiffusionModel::modifyVelocity (C++ function)

CollisionModel::StatisticalDiffusionModel::setSTPParameters (C++ function) CollisionModel::StatisticalDiffusionModel::StatisticalDiffusionModel (C++ function), [1], [2] CollisionModel::StatisticalDiffusionModel::updateModelParticleParameters (C++ function) CollisionModel::StatisticalDiffusionModel::updateModelTimestepParameters (C++ function) CollisionModel::util (C++ type) CollisionModel::util::D_AIR (C++ member) CollisionModel::util::estimateCollisionDiameterFromMass (C++ function) CollisionModel::util::estimateMobility (C++ function) CollisionModel::util::getAirToGas (C++ function) CollisionModel::util::getCollisionCountFunction (C++ function) CollisionModel::util::M_AIR (C++ member) Core (C++ type) Core::AbstractRandomGeneratorPool (C++ class) Core::AbstractRandomGeneratorPool::getRandomSource (C++ function) Core::AbstractRandomGeneratorPool::getThreadRandomSource (C++ function) Core::AbstractRandomGeneratorPool::getUniformDistribution (C++ function) Core::AbstractRandomGeneratorPool::setSeedForElements (C++ function) Core::AbstractRandomGeneratorPool::~AbstractRandomGeneratorPool (C++ function) Core::AMU_TO_KG (C++ member) Core::azimuthRotate (C++ function) Core::cartesianToPolar (C++ function) Core::degToRad (C++ function) Core::ELECTRIC_CONSTANT (C++ member) Core::ELEMENTARY_CHARGE (C++ member) Core::elevationRotate (C++ function) Core::EPSILON_0 (C++ member) Core::JOULE_TO_EV (C++ member) Core::K_BOLTZMANN (C++ member) Core::MersenneBitSource (C++ class) Core::MersenneBitSource::internalRandomSource (C++ member) Core::MersenneBitSource::MersenneBitSource (C++ function) Core::MersenneBitSource::operator() (C++ function) Core::MersenneBitSource::seed (C++ function) Core::MOL_VOLUME (C++ member) Core::N_AVOGADRO (C++ member) Core::NormalTestDistribution (C++ class) Core::NormalTestDistribution::NormalTestDistribution (C++ function) Core::NormalTestDistribution::rndValue (C++ function) Core::Particle (C++ class) Core::Particle::getAcceleration (C++ function) Core::Particle::getAuxCollisionParams (C++ function) Core::Particle::getCharge (C++ function) Core::Particle::getDiameter (C++ function) Core::Particle::getFloatAttribute (C++ function) Core::Particle::getIndex (C++ function) Core::Particle::getIntegerAttribute (C++ function) Core::Particle::getLocation (C++ function) Core::Particle::getLowFieldMobility (C++ function) Core::Particle::getMass (C++ function) Core::Particle::getMeanFreePathSTP (C++ function) Core::Particle::getMeanThermalVelocitySTP (C++ function) Core::Particle::getMobility (C++ function) Core::Particle::getMolecularStructure (C++ function) Core::Particle::getSplatTime (C++ function) Core::Particle::getTimeOfBirth (C++ function) Core::Particle::getVelocity (C++ function) Core::Particle::isActive (C++ function) Core::Particle::isInvalid (C++ function) Core::Particle::Particle (C++ function), [1], [2], [3], [4], [5] Core::Particle::setAcceleration (C++ function) Core::Particle::setActive (C++ function) Core::Particle::setChargeElementary (C++ function) Core::Particle::setDiameter (C++ function) Core::Particle::setFloatAttribute (C++ function) Core::Particle::setIndex (C++ function) Core::Particle::setIntegerAttribute (C++ function) Core::Particle::setInvalid (C++ function) Core::Particle::setLocation (C++ function) Core::Particle::setLowFieldMobility (C++ function) Core::Particle::setMassAMU (C++ function) Core::Particle::setMeanFreePathSTP (C++ function) Core::Particle::setMeanThermalVelocitySTP (C++ function) Core::Particle::setMobility (C++ function) Core::Particle::setMolecularStructure (C++ function) Core::Particle::setSplatTime (C++ function) Core::Particle::setTimeOfBirth (C++ function) Core::Particle::setVelocity (C++ function) Core::Particle::~Particle (C++ function) Core::radToDeg (C++ function) Core::RandomDistribution (C++ class) Core::RandomDistribution::rndValue (C++ function) Core::RandomDistribution::~RandomDistribution (C++ function) Core::RandomGeneratorPool (C++ class) Core::RandomGeneratorPool::getRandomSource (C++ function) Core::RandomGeneratorPool::getThreadRandomSource (C++ function) Core::RandomGeneratorPool::getUniformDistribution (C++ function) Core::RandomGeneratorPool::RandomGeneratorPool (C++ function) Core::RandomGeneratorPool::RNGPoolElement (C++ class) Core::RandomGeneratorPool::RNGPoolElement::getRandomBitSource (C++ function) Core::RandomGeneratorPool::RNGPoolElement::normalRealRndValue (C++ function) Core::RandomGeneratorPool::RNGPoolElement::RNGPoolElement (C++ function) Core::RandomGeneratorPool::RNGPoolElement::seed (C++ function) Core::RandomGeneratorPool::RNGPoolElement::uniformRealRndValue (C++ function) Core::RandomGeneratorPool::setSeedForElements (C++ function) Core::RandomSource (C++ class) Core::RandomSource::getRandomBitSource (C++ function) Core::RandomSource::normalRealRndValue (C++ function) Core::RandomSource::uniformRealRndValue (C++ function) Core::RandomSource::~RandomSource (C++ function) Core::RGas (C++ member) Core::TestBitSource (C++ class) Core::TestBitSource::operator() (C++ function) Core::TestBitSource::TestBitSource (C++ function) Core::TestRandomGeneratorPool (C++ class) Core::TestRandomGeneratorPool::getRandomSource (C++ function) Core::TestRandomGeneratorPool::getThreadRandomSource (C++ function) Core::TestRandomGeneratorPool::getUniformDistribution (C++ function) Core::TestRandomGeneratorPool::setSeedForElements (C++ function) Core::TestRandomGeneratorPool::TestRandomGeneratorPool (C++ function) Core::TestRandomGeneratorPool::TestRNGPoolElement (C++ class) Core::TestRandomGeneratorPool::TestRNGPoolElement::getRandomBitSource (C++ function) Core::TestRandomGeneratorPool::TestRNGPoolElement::normalRealRndValue (C++ function) Core::TestRandomGeneratorPool::TestRNGPoolElement::TestRNGPoolElement (C++ function) Core::TestRandomGeneratorPool::TestRNGPoolElement::uniformRealRndValue (C++ function) Core::UniformRandomDistribution (C++ class) Core::UniformRandomDistribution::rndValue (C++ function) Core::UniformRandomDistribution::UniformRandomDistribution (C++ function) Core::UniformTestDistribution (C++ class) Core::UniformTestDistribution::rndValue (C++ function) Core::UniformTestDistribution::UniformTestDistribution (C++ function), [1] Core::Vector (C++ class) Core::Vector::crossProduct (C++ function) Core::Vector::magnitude (C++ function) Core::Vector::magnitudeSquared (C++ function) Core::Vector::operator!= (C++ function) Core::Vector::operator* (C++ function), [1], [2] Core::Vector::operator+ (C++ function) Core::Vector::operator+= (C++ function) Core::Vector::operator- (C++ function) Core::Vector::operator/ (C++ function) Core::Vector::operator== (C++ function) Core::Vector::printState (C++ function) Core::Vector::set (C++ function) Core::Vector::Vector (C++ function), [1], [2] Core::Vector::x (C++ function), [1] Core::Vector::y (C++ function), [1] Core::Vector::z (C++ function), [1]

E

ExaFMMt::FMMSolver (C++ class) ExaFMMt::FMMSolver::computeChargeDistribution (C++ function)

ExaFMMt::FMMSolver::getEFieldFromSpaceCharge (C++ function) ExaFMMt::FMMSolver::setExpansionOrder (C++ function) ExaFMMt::FMMSolver::setMaxBodiesPerLeaf (C++ function)

F

FileIO::AverageChargePositionWriter (C++ class) FileIO::AverageChargePositionWriter::AverageChargePositionWriter (C++ function) FileIO::AverageChargePositionWriter::writeTimestep (C++ function) FileIO::AverageChargePositionWriter::~AverageChargePositionWriter (C++ function) FileIO::HDF5Reader (C++ class) FileIO::HDF5Reader::DataField (C++ struct) FileIO::HDF5Reader::DataField::data (C++ member) FileIO::HDF5Reader::DataField::dims (C++ member) FileIO::HDF5Reader::DataField::get (C++ function) FileIO::HDF5Reader::DataField::rank (C++ member) FileIO::HDF5Reader::datasetNDims (C++ function) FileIO::HDF5Reader::HDF5Reader (C++ function) FileIO::HDF5Reader::namesOfDatasetsInGroup (C++ function) FileIO::HDF5Reader::namesOfObjectsInGroup (C++ function) FileIO::HDF5Reader::numberOfObjectsInGroup (C++ function) FileIO::HDF5Reader::readAttributeVector (C++ function) FileIO::HDF5Reader::readDataset (C++ function) FileIO::IdealizedQitFFTWriter (C++ class) FileIO::IdealizedQitFFTWriter::IdealizedQitFFTWriter (C++ function) FileIO::IdealizedQitFFTWriter::writeTimestep (C++ function) FileIO::IdealizedQitFFTWriter::writeTimestepAverageIonCloudPosition (C++ function) FileIO::IdealizedQitFFTWriter::writeTimestepMassResolved (C++ function) FileIO::IdealizedQitFFTWriter::~IdealizedQitFFTWriter (C++ function) FileIO::InductionCurrentWriter (C++ class) FileIO::InductionCurrentWriter::InductionCurrentWriter (C++ function) FileIO::InductionCurrentWriter::writeTimestep (C++ function)

FileIO::InductionCurrentWriter::~InductionCurrentWriter (C++ function) FileIO::IonCloudReader (C++ class) FileIO::IonCloudReader::readIonCloud (C++ function) FileIO::MolecularStructureReader (C++ class) FileIO::MolecularStructureReader::readMolecularStructure (C++ function) FileIO::Scalar_writer (C++ class) FileIO::Scalar_writer::Scalar_writer (C++ function) FileIO::Scalar_writer::writeTimestep (C++ function), [1], [2], [3], [4] FileIO::Scalar_writer::~Scalar_writer (C++ function) FileIO::SimpleVTKwriter (C++ class) FileIO::SimpleVTKwriter::SimpleVTKwriter (C++ function) FileIO::SimpleVTKwriter::write (C++ function) FileIO::SimpleVTKwriter::~SimpleVTKwriter (C++ function) FileIO::TrajectoryHDF5Writer (C++ class) FileIO::TrajectoryHDF5Writer::finalizeTrajectory (C++ function) FileIO::TrajectoryHDF5Writer::setParticleAttributes (C++ function), [1] FileIO::TrajectoryHDF5Writer::TrajectoryHDF5Writer (C++ function) FileIO::TrajectoryHDF5Writer::write3DVectorListDataset (C++ function) FileIO::TrajectoryHDF5Writer::writeArrayDataSet (C++ function), [1] FileIO::TrajectoryHDF5Writer::writeNumericListDataset (C++ function) FileIO::TrajectoryHDF5Writer::writeSplatTimes (C++ function) FileIO::TrajectoryHDF5Writer::writeStartSplatData (C++ function) FileIO::TrajectoryHDF5Writer::writeTimestep (C++ function) FileIO::TrajectoryHDF5Writer::writeTrajectoryAttribute (C++ function), [1], [2] FMM3D::FMMSolver (C++ class) FMM3D::FMMSolver::computeChargeDistribution (C++ function) FMM3D::FMMSolver::setRequestedPrecision (C++ function)

I

Integration::AbstractTimeIntegrator (C++ class) Integration::AbstractTimeIntegrator::AbstractTimeIntegrator (C++ function), [1] Integration::AbstractTimeIntegrator::addParticle (C++ function) Integration::AbstractTimeIntegrator::finalizeSimulation (C++ function) Integration::AbstractTimeIntegrator::particleStartMonitoringFctType (C++ type) Integration::AbstractTimeIntegrator::pTobPair_t (C++ type) Integration::AbstractTimeIntegrator::run (C++ function) Integration::AbstractTimeIntegrator::runSingleStep (C++ function) Integration::AbstractTimeIntegrator::RunState (C++ enum) Integration::AbstractTimeIntegrator::runState (C++ function) Integration::AbstractTimeIntegrator::RunState::IN_TERMINATION (C++ enumerator) Integration::AbstractTimeIntegrator::RunState::RUNNING (C++ enumerator) Integration::AbstractTimeIntegrator::RunState::STOPPED (C++ enumerator) Integration::AbstractTimeIntegrator::setTerminationState (C++ function) Integration::AbstractTimeIntegrator::time (C++ function) Integration::AbstractTimeIntegrator::timeStep (C++ function) Integration::AbstractTimeIntegrator::~AbstractTimeIntegrator (C++ function) Integration::FMMVerletIntegrator (C++ class) Integration::FMMVerletIntegrator::addParticle (C++ function) Integration::FMMVerletIntegrator::finalizeSimulation (C++ function) Integration::FMMVerletIntegrator::FMMVerletIntegrator (C++ function), [1] Integration::FMMVerletIntegrator::getFMMSolver (C++ function) Integration::FMMVerletIntegrator::run (C++ function) Integration::FMMVerletIntegrator::runSingleStep (C++ function) Integration::FullSumRK4Integrator (C++ class) Integration::FullSumRK4Integrator::addParticle (C++ function) Integration::FullSumRK4Integrator::finalizeSimulation (C++ function) Integration::FullSumRK4Integrator::FullSumRK4Integrator (C++ function), [1] Integration::FullSumRK4Integrator::run (C++ function) Integration::FullSumRK4Integrator::runSingleStep (C++ function) Integration::FullSumVerletIntegrator (C++ class)

Integration::FullSumVerletIntegrator::addParticle (C++ function) Integration::FullSumVerletIntegrator::finalizeSimulation (C++ function) Integration::FullSumVerletIntegrator::FullSumVerletIntegrator (C++ function), [1] Integration::FullSumVerletIntegrator::run (C++ function) Integration::FullSumVerletIntegrator::runSingleStep (C++ function) Integration::ParallelRK4Integrator (C++ class) Integration::ParallelRK4Integrator::addParticle (C++ function) Integration::ParallelRK4Integrator::finalizeSimulation (C++ function) Integration::ParallelRK4Integrator::ParallelRK4Integrator (C++ function), [1] Integration::ParallelRK4Integrator::run (C++ function) Integration::ParallelRK4Integrator::runSingleStep (C++ function) Integration::ParallelVerletIntegrator (C++ class) Integration::ParallelVerletIntegrator::addParticle (C++ function) Integration::ParallelVerletIntegrator::finalizeSimulation (C++ function) Integration::ParallelVerletIntegrator::ParallelVerletIntegrator (C++ function), [1] Integration::ParallelVerletIntegrator::run (C++ function) Integration::ParallelVerletIntegrator::runSingleStep (C++ function) Integration::VelocityIntegrator (C++ class) Integration::VelocityIntegrator::addParticle (C++ function) Integration::VelocityIntegrator::finalizeSimulation (C++ function) Integration::VelocityIntegrator::otherActionsFctType (C++ type) Integration::VelocityIntegrator::run (C++ function) Integration::VelocityIntegrator::runSingleStep (C++ function) Integration::VelocityIntegrator::timestepWriteFctType (C++ type) Integration::VelocityIntegrator::velocityFctType (C++ type) Integration::VelocityIntegrator::VelocityIntegrator (C++ function) Integration::VerletIntegrator (C++ class) Integration::VerletIntegrator::addParticle (C++ function) Integration::VerletIntegrator::finalizeSimulation (C++ function) Integration::VerletIntegrator::run (C++ function) Integration::VerletIntegrator::runSingleStep (C++ function) Integration::VerletIntegrator::VerletIntegrator (C++ function), [1]

P

ParticleSimulation (C++ type) ParticleSimulation::BoxStartZone (C++ class) ParticleSimulation::BoxStartZone::BoxStartZone (C++ function) ParticleSimulation::BoxStartZone::getRandomParticlePosition (C++ function) ParticleSimulation::CylinderStartZone (C++ class) ParticleSimulation::CylinderStartZone::CylinderStartZone (C++ function) ParticleSimulation::CylinderStartZone::getRandomParticlePosition (C++ function) ParticleSimulation::fillVector (C++ function) ParticleSimulation::InterpolatedField (C++ class) ParticleSimulation::InterpolatedField::findLowerBoundIndices (C++ function) ParticleSimulation::InterpolatedField::getBounds (C++ function) ParticleSimulation::InterpolatedField::getGrid (C++ function) ParticleSimulation::InterpolatedField::getInterpolatedScalar (C++ function) ParticleSimulation::InterpolatedField::getInterpolatedVector (C++ function) ParticleSimulation::InterpolatedField::getScalar (C++ function) ParticleSimulation::InterpolatedField::getVector (C++ function) ParticleSimulation::InterpolatedField::InterpolatedField (C++ function) ParticleSimulation::linspace (C++ function) ParticleSimulation::ParticleStartZone (C++ class) ParticleSimulation::ParticleStartZone::getRandomParticlePosition (C++ function) ParticleSimulation::ParticleStartZone::getRandomParticlesInStartZone (C++ function) ParticleSimulation::ParticleStartZone::~ParticleStartZone (C++ function) ParticleSimulation::SampledWaveform (C++ class)

ParticleSimulation::SampledWaveform::getInterpolatedValue (C++ function) ParticleSimulation::SampledWaveform::getValue (C++ function) ParticleSimulation::SampledWaveform::getValueLooped (C++ function) ParticleSimulation::SampledWaveform::good (C++ function) ParticleSimulation::SampledWaveform::operator[] (C++ function) ParticleSimulation::SampledWaveform::SampledWaveform (C++ function) ParticleSimulation::SampledWaveform::size (C++ function) ParticleSimulation::SimionPotentialArray (C++ class) ParticleSimulation::SimionPotentialArray::getBounds (C++ function) ParticleSimulation::SimionPotentialArray::getField (C++ function) ParticleSimulation::SimionPotentialArray::getHeaderString (C++ function) ParticleSimulation::SimionPotentialArray::getInterpolatedPotential (C++ function) ParticleSimulation::SimionPotentialArray::getNumberOfGridPoints (C++ function) ParticleSimulation::SimionPotentialArray::getPotential (C++ function) ParticleSimulation::SimionPotentialArray::isElectrode (C++ function) ParticleSimulation::SimionPotentialArray::isInside (C++ function) ParticleSimulation::SimionPotentialArray::printState (C++ function) ParticleSimulation::SimionPotentialArray::SimionPotentialArray (C++ function), [1], [2], [3] ParticleSimulation::util (C++ type) ParticleSimulation::util::getIonOnLineVector (C++ function) ParticleSimulation::util::getPositionsOnGrid (C++ function) ParticleSimulation::util::getRandomPositionsInBox (C++ function) ParticleSimulation::util::prepareIonsOnCylinderWalls (C++ function) ParticleSimulation::util::probeForces (C++ function)

R

RS (C++ type) RS::AbstractReaction (C++ class) RS::AbstractReaction::AbstractReaction (C++ function) RS::AbstractReaction::attemptReaction (C++ function), [1] RS::AbstractReaction::discreteEducts (C++ function) RS::AbstractReaction::discreteProducts (C++ function) RS::AbstractReaction::educts (C++ function) RS::AbstractReaction::generateRandomDecision (C++ function) RS::AbstractReaction::getLabel (C++ function) RS::AbstractReaction::getTypeLabel (C++ function) RS::AbstractReaction::isCollisionReaction (C++ function) RS::AbstractReaction::isIndependent (C++ function) RS::AbstractReaction::operator<< (C++ function) RS::AbstractReaction::products (C++ function) RS::AbstractReaction::staticReactionConcentration (C++ function) RS::AbstractReaction::updateStaticReactionConcentration (C++ function) RS::AbstractReaction::~AbstractReaction (C++ function) RS::ConcentrationFileWriter (C++ class) RS::ConcentrationFileWriter::closeFile (C++ function) RS::ConcentrationFileWriter::ConcentrationFileWriter (C++ function) RS::ConcentrationFileWriter::initFile (C++ function) RS::ConcentrationFileWriter::writeReactionStatistics (C++ function) RS::ConcentrationFileWriter::writeTimestep (C++ function) RS::ConfigFileParser (C++ class) RS::ConfigFileParser::getTestConfigSimple (C++ function) RS::ConfigFileParser::getTestConfigWaterClusters (C++ function) RS::ConfigFileParser::parseFile (C++ function) RS::ConfigFileParser::parseText (C++ function) RS::ConfigFileParser::splitString (C++ function) RS::FieldDependentVantHoffReaction (C++ class) RS::FieldDependentVantHoffReaction::attemptReaction (C++ function), [1] RS::FieldDependentVantHoffReaction::FieldDependentVantHoffReaction (C++ function) RS::K_BOLTZMANN (C++ member) RS::KG_PER_AMU (C++ member) RS::R_GAS (C++ member) RS::ReactiveParticle (C++ class) RS::ReactiveParticle::getSpecies (C++ function) RS::ReactiveParticle::operator<< (C++ function) RS::ReactiveParticle::ReactiveParticle (C++ function), [1], [2] RS::ReactiveParticle::setSpecies (C++ function) RS::SimpleCollisionStepReaction (C++ class) RS::SimpleCollisionStepReaction::attemptReaction (C++ function), [1] RS::SimpleCollisionStepReaction::SimpleCollisionStepReaction (C++ function) RS::Simulation (C++ class) RS::Simulation::addParticle (C++ function)

RS::Simulation::advanceTimestep (C++ function) RS::Simulation::collisionReact (C++ function) RS::Simulation::discreteConcentrations (C++ function) RS::Simulation::doReaction (C++ function) RS::Simulation::getParticle (C++ function) RS::Simulation::illEvents (C++ function) RS::Simulation::index_t (C++ type) RS::Simulation::logConcentrations (C++ function) RS::Simulation::logReactionStatistics (C++ function) RS::Simulation::operator<< (C++ function) RS::Simulation::particleReactedFctType (C++ type) RS::Simulation::performTimestep (C++ function), [1] RS::Simulation::printConcentrations (C++ function) RS::Simulation::printReactionStatistics (C++ function) RS::Simulation::react (C++ function) RS::Simulation::reactionConditionFctType (C++ type) RS::Simulation::reactionEvents (C++ function) RS::Simulation::removeParticle (C++ function) RS::Simulation::Simulation (C++ function), [1] RS::Simulation::simulationConfiguration (C++ function) RS::Simulation::simulationTime (C++ function) RS::Simulation::timestep (C++ function) RS::Simulation::totalReactionEvents (C++ function) RS::SimulationConfiguration (C++ class) RS::SimulationConfiguration::addReaction (C++ function) RS::SimulationConfiguration::addSubstance (C++ function) RS::SimulationConfiguration::getAllDiscreteSubstances (C++ function) RS::SimulationConfiguration::getAllReactions (C++ function) RS::SimulationConfiguration::getAllSubstances (C++ function) RS::SimulationConfiguration::reaction (C++ function) RS::SimulationConfiguration::substance (C++ function) RS::SimulationConfiguration::substanceByName (C++ function) RS::SimulationConfiguration::updateConfiguration (C++ function) RS::StaticReaction (C++ class) RS::StaticReaction::attemptReaction (C++ function), [1] RS::StaticReaction::StaticReaction (C++ function) RS::StaticThermalizingReaction (C++ class) RS::StaticThermalizingReaction::attemptReaction (C++ function), [1] RS::StaticThermalizingReaction::StaticThermalizingReaction (C++ function) RS::T_STANDARD (C++ member) RS::util (C++ type) RS::util::maxwellBoltzmannRandomVelocity (C++ function) RS::VantHoffReaction (C++ class) RS::VantHoffReaction::attemptReaction (C++ function), [1] RS::VantHoffReaction::VantHoffReaction (C++ function)

S

SpaceCharge::FieldCalculator (C++ class) SpaceCharge::FieldCalculator::getEFieldFromSpaceCharge (C++ function) SpaceCharge::FieldCalculator::~FieldCalculator (C++ function) SpaceCharge::GenericSpaceChargeSolver (C++ class) SpaceCharge::GenericSpaceChargeSolver::computeChargeDistribution (C++ function)

SpaceCharge::GenericSpaceChargeSolver::GenericSpaceChargeSolver (C++ function) SpaceCharge::GenericSpaceChargeSolver::getEFieldFromSpaceCharge (C++ function) SpaceCharge::GenericSpaceChargeSolver::getNumberOfParticles (C++ function) SpaceCharge::GenericSpaceChargeSolver::insertParticle (C++ function) SpaceCharge::GenericSpaceChargeSolver::removeParticle (C++ function)